rs33667753 SNP Detail

Summary

• ID
  rs33667753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACTCATA GGTGAGCAAG
  AGAGAAATAA CAAGTAAGAT CATCTTCCCC TCAGAAAAGA AAAACTCTTC CATTTGCTAT
  GTTTTGATTC CTTCTTGTGA ATAGGGAGAG TAAATGTGAT CTGGTAACAT CCCTACCATT
  TGTTGTAAGG AAACTAAAGT CTCTGTGTTG TGTAACAGGA GAGACTATCA AGATAGTGAT
  Y
  GAAGACTACG TGCAACACCT GAGCGGTTAC CACTTCAAAC TCAAGTTTGA CCCAGAGCTC
  CTTTTCAACC AGCAGTTCCA GTATCAGAAC CGCATTGCCT CTGAATTCAA CACACTCTAT
  CACTGGCACC CCCTGCTGCC CGACACCTTC AACATTGAAG ACCAGGAGTA CAGCTTCAAA
  CAGTTTCTCT ACAACAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513600	NES12839541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33667753					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513600	NES12839541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980056 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	within coordinates
Rr24983	regulatory region 24983	within coordinates
Tssr242	transcription start site region 242	1500 bp downstream
Tssr9233	transcription start site region 9233	1660 bp downstream
Tssr9234	transcription start site region 9234	1631 bp downstream
Tssr9235	transcription start site region 9235	1600 bp downstream
Tssr9236	transcription start site region 9236	1575 bp downstream
Tssr9237	transcription start site region 9237	1543 bp downstream
Tssr9238	transcription start site region 9238	1512 bp downstream
Tssr9239	transcription start site region 9239	1478 bp downstream
Tssr9240	transcription start site region 9240	1464 bp downstream
Tssr9241	transcription start site region 9241	1434 bp downstream
Tssr9242	transcription start site region 9242	1418 bp downstream
Tssr9243	transcription start site region 9243	1291 bp downstream
Tssr9244	transcription start site region 9244	1240 bp downstream
Tssr9245	transcription start site region 9245	1204 bp downstream
Tssr9246	transcription start site region 9246	1185 bp downstream
Tssr9247	transcription start site region 9247	1050 bp downstream
Tssr9248	transcription start site region 9248	617 bp downstream
Tssr9249	transcription start site region 9249	603 bp downstream
Tssr9250	transcription start site region 9250	402 bp downstream
Tssr9251	transcription start site region 9251	350 bp downstream
Tssr9252	transcription start site region 9252	315 bp downstream
Tssr9253	transcription start site region 9253	290 bp downstream
Tssr9254	transcription start site region 9254	274 bp downstream
Tssr9255	transcription start site region 9255	223 bp downstream
Tssr9256	transcription start site region 9256	18 bp downstream
Tssr9257	transcription start site region 9257	within coordinates
Tssr9258	transcription start site region 9258	19 bp upstream
Tssr9259	transcription start site region 9259	44 bp upstream
Tssr9260	transcription start site region 9260	99 bp upstream
Tssr9261	transcription start site region 9261	154 bp upstream
Tssr9262	transcription start site region 9262	162 bp upstream
Tssr9263	transcription start site region 9263	184 bp upstream
Tssr9264	transcription start site region 9264	229 bp upstream
Tssr9265	transcription start site region 9265	260 bp upstream
Tssr9266	transcription start site region 9266	349 bp upstream
Tssr9267	transcription start site region 9267	640 bp upstream
Tssr9268	transcription start site region 9268	696 bp upstream
Tssr9269	transcription start site region 9269	1079 bp upstream
Tssr9270	transcription start site region 9270	1119 bp upstream
Tssr9271	transcription start site region 9271	1143 bp upstream
Tssr9272	transcription start site region 9272	1173 bp upstream
Tssr9273	transcription start site region 9273	1225 bp upstream
Tssr9274	transcription start site region 9274	1243 bp upstream
Tssr9275	transcription start site region 9275	1270 bp upstream
Tssr9276	transcription start site region 9276	1285 bp upstream
Tssr9277	transcription start site region 9277	1335 bp upstream
Tssr9278	transcription start site region 9278	1356 bp upstream
Tssr9279	transcription start site region 9279	1377 bp upstream
Tssr9280	transcription start site region 9280	1394 bp upstream
Tssr9281	transcription start site region 9281	1500 bp upstream
Tssr9282	transcription start site region 9282	1535 bp upstream
Tssr9283	transcription start site region 9283	1549 bp upstream
Tssr9284	transcription start site region 9284	1564 bp upstream
Tssr9285	transcription start site region 9285	1574 bp upstream
Tssr9286	transcription start site region 9286	1658 bp upstream