rs33667873 SNP Detail

Summary

• ID
  rs33667873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112424227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGT GGCTGCGCCC TCAAGGATGC
  Y
  GTGCAGAGGA GGAACGCCCT GCGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45806660	mCV24791785	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33667873					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112424227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	within coordinates
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	1320 bp proximal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	1417 bp proximal
Rr399260	regulatory region 399260	within coordinates
Tpst2	protein-tyrosine sulfotransferase 2	330 bp upstream
Tssr47986	transcription start site region 47986	322 bp upstream
Tssr47987	transcription start site region 47987	333 bp upstream
Tssr47988	transcription start site region 47988	398 bp upstream
Tssr47989	transcription start site region 47989	1095 bp upstream
Tssr52564	transcription start site region 52564	within coordinates
Tssr52565	transcription start site region 52565	9 bp downstream