rs33668360 SNP Detail

Summary

• ID
  rs33668360
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11987553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTTCTACCC AGGCCCTTCT TCCAGCCCGA AGGTCATCAG CACTGATGCC TGGGATGTGC
  ATTATGCTTA GAGATTGGTA GGGGAGGGTT CTCTCTCTTG GGCCACTTTT GGTAACTGAA
  GATGGATGGT ATCACATGGG CAGCAAAGCT CTGGAGACAG ATGGCCTCAT CTTCACACAG
  TCCTCCCACA ACATCCTGTC CTTGTGCCCA GGAAGACCTA TTGCCGGAAG ACTCACATTA
  CATGGGAGTT CTACAGGCAA AAGGATACAG GAAGATGACA GGAGAGAGTC AAAGCCCTGT
  K
  TGTGTGGGGC GGGGGGGGGG GGGATGAAGA TGAAGGATGA AGGTGGATAG GCATCTATCT
  GTCTGCACAC TTACCCTTCG TGACCAGATC CAAGCTCATA TACACAGGGG TCTTGTAGAA
  GTACAAATTC AATGAGATGT CAAAAGGCAA CAACATATTG TTTTAATTTT AAATAGAACT
  CTTACAGTGA TGTCCAGGGA CATATGTTAC TAAAACATGT TTTATTATCC ACGGCTAGTA
  ATCGCAGCAA ACTTAGCTTG GCTTTTACCC TTCTCCTTCC TCTGTGGAGG ACTTCCAGGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39564347	mCV22930154	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss145165312	ENSMUSSNP1141486	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33668360					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11987553 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334163	regulatory region 334163	1953 bp distal
Rr334164	regulatory region 334164	248 bp proximal
Rr343776	regulatory region 343776	916 bp proximal