rs33668958 SNP Detail

Summary

• ID
  rs33668958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAGAAATTC CAAACTAAAT AATCCGAACA TTTAAATAAA ATGGCAAAAT TTATTAGCTG
  ACAAATTTGC CCAAGTTGAA CTCCAGTTCT TTGACACTTG CCAAATTCCC TTCAAATGAC
  TGCCATCCAG ATGTGATCTG CCAGTCTAGT ACAGACCAGA TAACACAAAC GAAACCATGT
  ACTAAAACCA GTCATTTACC TCAACATTTC TTTAACTCAA GAGAAAGCCA AAGTTGTCGT
  TTTCTCCACT GTGATCATCT CCAATTTTGC TTATCAGAGT GATGGTGAAC TCATTTTTTT
  W
  AAAATTCTAT TAGCAGTTAA TAAAGACGAT CAAGTCATTT TACATAAATG ATTCTGCTCC
  GTACCAAAAA AGGAGGAAAA AAAGAGCCAC CAGGGCCTCT CCTGCCCCTA GTACCTATTA
  TATATGCCAG GGGAGAGAAA CTAATTCTTC TAATGTAAAA GAAATAAAAC ACCTCGCACA
  AAGCTCTATT TCAATACAAT ACCCTTGTTG GAACAATCCA ACTGGTTGGT GCGCCAGAGA
  CCGGTATTTA CTTACTAGAT AAAAAGTTTG CGCCGGACGT GGTGGCGTAT GCCTTTAATC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45306456	mCV22515790	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33668958					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	910 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1	1698 bp upstream
Rr397362	regulatory region 397362	1545 bp upstream
Rr566423	regulatory region 566423	1015 bp distal
Rr566424	regulatory region 566424	within coordinates
Rr566425	regulatory region 566425	608 bp proximal
Rr566426	regulatory region 566426	1356 bp proximal
Rr566427	regulatory region 566427	1746 bp proximal
Snx5	sorting nexin 5	Intron
Tssr20524	transcription start site region 20524	1368 bp upstream
Tssr20525	transcription start site region 20525	1416 bp upstream
Tssr20526	transcription start site region 20526	1672 bp upstream
Tssr20527	transcription start site region 20527	1805 bp upstream
Tssr26594	transcription start site region 26594	860 bp downstream
Tssr26595	transcription start site region 26595	1234 bp downstream
Tssr26596	transcription start site region 26596	1298 bp downstream
Tssr26597	transcription start site region 26597	1574 bp downstream
Tssr26598	transcription start site region 26598	1630 bp downstream
Tssr26599	transcription start site region 26599	1646 bp downstream