rs33668974 SNP Detail

Summary

• ID
  rs33668974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGACTC ATACTCATAG
  GTGAGCAAGA GAGAAATAAC AAGTAAGATC ATCTTCCCCT CAGAAAAGAA AAACTCTTCC
  ATTTGCTATG TTTTGATTCC TTCTTGTGAA TAGGGAGAGT AAATGTGATC TGGTAACATC
  CCTACCATTT GTTGTAAGGA AACTAAAGTC TCTGTGTTGT GTAACAGGAG AGACTATCAA
  R
  ATAGTGATCG AAGACTACGT GCAACACCTG AGCGGTTACC ACTTCAAACT CAAGTTTGAC
  CCAGAGCTCC TTTTCAACCA GCAGTTCCAG TATCAGAACC GCATTGCCTC TGAATTCAAC
  ACACTCTATC ACTGGCACCC CCTGCTGCCC GACACCTTCA ACATTGAAGA CCAGGAGTAC
  AGCTTCAAAC AGTTTCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513601	NES12839540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33668974					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513601	NES12839540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980047 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	within coordinates
Rr24983	regulatory region 24983	within coordinates
Tssr242	transcription start site region 242	1491 bp downstream
Tssr9233	transcription start site region 9233	1651 bp downstream
Tssr9234	transcription start site region 9234	1622 bp downstream
Tssr9235	transcription start site region 9235	1591 bp downstream
Tssr9236	transcription start site region 9236	1566 bp downstream
Tssr9237	transcription start site region 9237	1534 bp downstream
Tssr9238	transcription start site region 9238	1503 bp downstream
Tssr9239	transcription start site region 9239	1469 bp downstream
Tssr9240	transcription start site region 9240	1455 bp downstream
Tssr9241	transcription start site region 9241	1425 bp downstream
Tssr9242	transcription start site region 9242	1409 bp downstream
Tssr9243	transcription start site region 9243	1282 bp downstream
Tssr9244	transcription start site region 9244	1231 bp downstream
Tssr9245	transcription start site region 9245	1195 bp downstream
Tssr9246	transcription start site region 9246	1176 bp downstream
Tssr9247	transcription start site region 9247	1041 bp downstream
Tssr9248	transcription start site region 9248	608 bp downstream
Tssr9249	transcription start site region 9249	594 bp downstream
Tssr9250	transcription start site region 9250	393 bp downstream
Tssr9251	transcription start site region 9251	341 bp downstream
Tssr9252	transcription start site region 9252	306 bp downstream
Tssr9253	transcription start site region 9253	281 bp downstream
Tssr9254	transcription start site region 9254	265 bp downstream
Tssr9255	transcription start site region 9255	214 bp downstream
Tssr9256	transcription start site region 9256	9 bp downstream
Tssr9257	transcription start site region 9257	5 bp upstream
Tssr9258	transcription start site region 9258	28 bp upstream
Tssr9259	transcription start site region 9259	53 bp upstream
Tssr9260	transcription start site region 9260	108 bp upstream
Tssr9261	transcription start site region 9261	163 bp upstream
Tssr9262	transcription start site region 9262	171 bp upstream
Tssr9263	transcription start site region 9263	193 bp upstream
Tssr9264	transcription start site region 9264	238 bp upstream
Tssr9265	transcription start site region 9265	269 bp upstream
Tssr9266	transcription start site region 9266	358 bp upstream
Tssr9267	transcription start site region 9267	649 bp upstream
Tssr9268	transcription start site region 9268	705 bp upstream
Tssr9269	transcription start site region 9269	1088 bp upstream
Tssr9270	transcription start site region 9270	1128 bp upstream
Tssr9271	transcription start site region 9271	1152 bp upstream
Tssr9272	transcription start site region 9272	1182 bp upstream
Tssr9273	transcription start site region 9273	1234 bp upstream
Tssr9274	transcription start site region 9274	1252 bp upstream
Tssr9275	transcription start site region 9275	1279 bp upstream
Tssr9276	transcription start site region 9276	1294 bp upstream
Tssr9277	transcription start site region 9277	1344 bp upstream
Tssr9278	transcription start site region 9278	1365 bp upstream
Tssr9279	transcription start site region 9279	1386 bp upstream
Tssr9280	transcription start site region 9280	1403 bp upstream
Tssr9281	transcription start site region 9281	1509 bp upstream
Tssr9282	transcription start site region 9282	1544 bp upstream
Tssr9283	transcription start site region 9283	1558 bp upstream
Tssr9284	transcription start site region 9284	1573 bp upstream
Tssr9285	transcription start site region 9285	1583 bp upstream
Tssr9286	transcription start site region 9286	1667 bp upstream