rs33668975 SNP Detail

Summary

• ID
  rs33668975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGGAGCA CAACAGAGTG
  TGCGACATAC TCAAGCAGGA GCATCCTGAG TGGGGTGATG AGCAACTATT CCAAACCAGC
  AGACTCATAC TCATAGGTGA GCAAGAGAGA AATAACAAGT AAGATCATCT TCCCCTCAGA
  AAAGAAAAAC TCTTCCATTT GCTATGTTTT GATTCCTTCT TGTGAATAGG GAGAGTAAAT
  R
  TGATCTGGTA ACATCCCTAC CATTTGTTGT AAGGAAACTA AAGTCTCTGT GTTGTGTAAC
  AGGAGAGACT ATCAAGATAG TGATCGAAGA CTACGTGCAA CACCTGAGCG GTTACCACTT
  CAAACTCAAG TTTGACCCAG AGCTCCTTTT CAACCAGCAG TTCCAGTATC AGAACCGCAT
  TGCCTCTGAA TTCAACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513603	NES12839538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33668975					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513603	NES12839538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979971 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	30 bp proximal
Rr24983	regulatory region 24983	62 bp proximal
Tssr242	transcription start site region 242	1415 bp downstream
Tssr9233	transcription start site region 9233	1575 bp downstream
Tssr9234	transcription start site region 9234	1546 bp downstream
Tssr9235	transcription start site region 9235	1515 bp downstream
Tssr9236	transcription start site region 9236	1490 bp downstream
Tssr9237	transcription start site region 9237	1458 bp downstream
Tssr9238	transcription start site region 9238	1427 bp downstream
Tssr9239	transcription start site region 9239	1393 bp downstream
Tssr9240	transcription start site region 9240	1379 bp downstream
Tssr9241	transcription start site region 9241	1349 bp downstream
Tssr9242	transcription start site region 9242	1333 bp downstream
Tssr9243	transcription start site region 9243	1206 bp downstream
Tssr9244	transcription start site region 9244	1155 bp downstream
Tssr9245	transcription start site region 9245	1119 bp downstream
Tssr9246	transcription start site region 9246	1100 bp downstream
Tssr9247	transcription start site region 9247	965 bp downstream
Tssr9248	transcription start site region 9248	532 bp downstream
Tssr9249	transcription start site region 9249	518 bp downstream
Tssr9250	transcription start site region 9250	317 bp downstream
Tssr9251	transcription start site region 9251	265 bp downstream
Tssr9252	transcription start site region 9252	230 bp downstream
Tssr9253	transcription start site region 9253	205 bp downstream
Tssr9254	transcription start site region 9254	189 bp downstream
Tssr9255	transcription start site region 9255	138 bp downstream
Tssr9256	transcription start site region 9256	57 bp upstream
Tssr9257	transcription start site region 9257	81 bp upstream
Tssr9258	transcription start site region 9258	104 bp upstream
Tssr9259	transcription start site region 9259	129 bp upstream
Tssr9260	transcription start site region 9260	184 bp upstream
Tssr9261	transcription start site region 9261	239 bp upstream
Tssr9262	transcription start site region 9262	247 bp upstream
Tssr9263	transcription start site region 9263	269 bp upstream
Tssr9264	transcription start site region 9264	314 bp upstream
Tssr9265	transcription start site region 9265	345 bp upstream
Tssr9266	transcription start site region 9266	434 bp upstream
Tssr9267	transcription start site region 9267	725 bp upstream
Tssr9268	transcription start site region 9268	781 bp upstream
Tssr9269	transcription start site region 9269	1164 bp upstream
Tssr9270	transcription start site region 9270	1204 bp upstream
Tssr9271	transcription start site region 9271	1228 bp upstream
Tssr9272	transcription start site region 9272	1258 bp upstream
Tssr9273	transcription start site region 9273	1310 bp upstream
Tssr9274	transcription start site region 9274	1328 bp upstream
Tssr9275	transcription start site region 9275	1355 bp upstream
Tssr9276	transcription start site region 9276	1370 bp upstream
Tssr9277	transcription start site region 9277	1420 bp upstream
Tssr9278	transcription start site region 9278	1441 bp upstream
Tssr9279	transcription start site region 9279	1462 bp upstream
Tssr9280	transcription start site region 9280	1479 bp upstream
Tssr9281	transcription start site region 9281	1585 bp upstream
Tssr9282	transcription start site region 9282	1620 bp upstream
Tssr9283	transcription start site region 9283	1634 bp upstream
Tssr9284	transcription start site region 9284	1649 bp upstream
Tssr9285	transcription start site region 9285	1659 bp upstream
Tssr9286	transcription start site region 9286	1743 bp upstream