rs33668976 SNP Detail

Summary

• ID
  rs33668976
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTATTCCA AACCAGCAGA CTCATACTCA TAGGTGAGCA
  AGAGAGAAAT AACAAGTAAG ATCATCTTCC CCTCAGAAAA GAAAAACTCT TCCATTTGCT
  W
  TGTTTTGATT CCTTCTTGTG AATAGGGAGA GTAAATGTGA TCTGGTAACA TCCCTACCAT
  TTGTTGTAAG GAAACTAAAG TCTCTGTGTT GTGTAACAGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49513604	NES12924108	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33668976					SNP	A	A	A	T	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513604	NES12924108	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979934 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	67 bp proximal
Rr24983	regulatory region 24983	99 bp proximal
Tssr242	transcription start site region 242	1378 bp downstream
Tssr9232	transcription start site region 9232	1994 bp downstream
Tssr9233	transcription start site region 9233	1538 bp downstream
Tssr9234	transcription start site region 9234	1509 bp downstream
Tssr9235	transcription start site region 9235	1478 bp downstream
Tssr9236	transcription start site region 9236	1453 bp downstream
Tssr9237	transcription start site region 9237	1421 bp downstream
Tssr9238	transcription start site region 9238	1390 bp downstream
Tssr9239	transcription start site region 9239	1356 bp downstream
Tssr9240	transcription start site region 9240	1342 bp downstream
Tssr9241	transcription start site region 9241	1312 bp downstream
Tssr9242	transcription start site region 9242	1296 bp downstream
Tssr9243	transcription start site region 9243	1169 bp downstream
Tssr9244	transcription start site region 9244	1118 bp downstream
Tssr9245	transcription start site region 9245	1082 bp downstream
Tssr9246	transcription start site region 9246	1063 bp downstream
Tssr9247	transcription start site region 9247	928 bp downstream
Tssr9248	transcription start site region 9248	495 bp downstream
Tssr9249	transcription start site region 9249	481 bp downstream
Tssr9250	transcription start site region 9250	280 bp downstream
Tssr9251	transcription start site region 9251	228 bp downstream
Tssr9252	transcription start site region 9252	193 bp downstream
Tssr9253	transcription start site region 9253	168 bp downstream
Tssr9254	transcription start site region 9254	152 bp downstream
Tssr9255	transcription start site region 9255	101 bp downstream
Tssr9256	transcription start site region 9256	94 bp upstream
Tssr9257	transcription start site region 9257	118 bp upstream
Tssr9258	transcription start site region 9258	141 bp upstream
Tssr9259	transcription start site region 9259	166 bp upstream
Tssr9260	transcription start site region 9260	221 bp upstream
Tssr9261	transcription start site region 9261	276 bp upstream
Tssr9262	transcription start site region 9262	284 bp upstream
Tssr9263	transcription start site region 9263	306 bp upstream
Tssr9264	transcription start site region 9264	351 bp upstream
Tssr9265	transcription start site region 9265	382 bp upstream
Tssr9266	transcription start site region 9266	471 bp upstream
Tssr9267	transcription start site region 9267	762 bp upstream
Tssr9268	transcription start site region 9268	818 bp upstream
Tssr9269	transcription start site region 9269	1201 bp upstream
Tssr9270	transcription start site region 9270	1241 bp upstream
Tssr9271	transcription start site region 9271	1265 bp upstream
Tssr9272	transcription start site region 9272	1295 bp upstream
Tssr9273	transcription start site region 9273	1347 bp upstream
Tssr9274	transcription start site region 9274	1365 bp upstream
Tssr9275	transcription start site region 9275	1392 bp upstream
Tssr9276	transcription start site region 9276	1407 bp upstream
Tssr9277	transcription start site region 9277	1457 bp upstream
Tssr9278	transcription start site region 9278	1478 bp upstream
Tssr9279	transcription start site region 9279	1499 bp upstream
Tssr9280	transcription start site region 9280	1516 bp upstream
Tssr9281	transcription start site region 9281	1622 bp upstream
Tssr9282	transcription start site region 9282	1657 bp upstream
Tssr9283	transcription start site region 9283	1671 bp upstream
Tssr9284	transcription start site region 9284	1686 bp upstream
Tssr9285	transcription start site region 9285	1696 bp upstream
Tssr9286	transcription start site region 9286	1780 bp upstream