rs33668977 SNP Detail

Summary

• ID
  rs33668977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAATATAG GATACTAATA CTATTCAACA TAAAGAAATA
  TACAGACTTG TAGCTCTGGT AGACAAATTA TTTTAGAATT TTGTGGCTAT GAAAAAGTCA
  Y
  TTATTGAGCT AGATTGGTGA TTAAGAACAG TTGTTGCTTT TGCTTAAGTT CTTAACACCT
  ACATGACAGT TCACAACCAC CTATAACTCC AGTCAGTTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513605	NES12839782	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33668977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513605	NES12839782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979106 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	895 bp proximal
Rr24983	regulatory region 24983	927 bp proximal
Rr31002	regulatory region 31002	1706 bp distal
Tssr242	transcription start site region 242	550 bp downstream
Tssr9230	transcription start site region 9230	1242 bp downstream
Tssr9231	transcription start site region 9231	1209 bp downstream
Tssr9232	transcription start site region 9232	1166 bp downstream
Tssr9233	transcription start site region 9233	710 bp downstream
Tssr9234	transcription start site region 9234	681 bp downstream
Tssr9235	transcription start site region 9235	650 bp downstream
Tssr9236	transcription start site region 9236	625 bp downstream
Tssr9237	transcription start site region 9237	593 bp downstream
Tssr9238	transcription start site region 9238	562 bp downstream
Tssr9239	transcription start site region 9239	528 bp downstream
Tssr9240	transcription start site region 9240	514 bp downstream
Tssr9241	transcription start site region 9241	484 bp downstream
Tssr9242	transcription start site region 9242	468 bp downstream
Tssr9243	transcription start site region 9243	341 bp downstream
Tssr9244	transcription start site region 9244	290 bp downstream
Tssr9245	transcription start site region 9245	254 bp downstream
Tssr9246	transcription start site region 9246	235 bp downstream
Tssr9247	transcription start site region 9247	100 bp downstream
Tssr9248	transcription start site region 9248	310 bp upstream
Tssr9249	transcription start site region 9249	337 bp upstream
Tssr9250	transcription start site region 9250	505 bp upstream
Tssr9251	transcription start site region 9251	551 bp upstream
Tssr9252	transcription start site region 9252	606 bp upstream
Tssr9253	transcription start site region 9253	636 bp upstream
Tssr9254	transcription start site region 9254	663 bp upstream
Tssr9255	transcription start site region 9255	682 bp upstream
Tssr9256	transcription start site region 9256	922 bp upstream
Tssr9257	transcription start site region 9257	946 bp upstream
Tssr9258	transcription start site region 9258	969 bp upstream
Tssr9259	transcription start site region 9259	994 bp upstream
Tssr9260	transcription start site region 9260	1049 bp upstream
Tssr9261	transcription start site region 9261	1104 bp upstream
Tssr9262	transcription start site region 9262	1112 bp upstream
Tssr9263	transcription start site region 9263	1134 bp upstream
Tssr9264	transcription start site region 9264	1179 bp upstream
Tssr9265	transcription start site region 9265	1210 bp upstream
Tssr9266	transcription start site region 9266	1299 bp upstream
Tssr9267	transcription start site region 9267	1590 bp upstream
Tssr9268	transcription start site region 9268	1646 bp upstream