rs33668978 SNP Detail

Summary

• ID
  rs33668978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTATTGA GGCAGAAGAG
  GTCCAGCCTT TACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  CATACAAAAT CCCCTTCTAT GCTTCTTTAA ACAATGTAAA ATTACTATTA TGGTTATAAT
  GAAGCAAGTG GCATATTTAA TATAGGATAC TAATACTATT CAACATAAAG AAATATACAG
  R
  CTTGTAGCTC TGGTAGACAA ATTATTTTAG AATTTTGTGG CTATGAAAAA GTCACTTATT
  GAGCTAGATT GGTGATTAAG AACAGTTGTT GCTTTTGCTT AAGTTCTTAA CACCTACATG
  ACAGTTCACA ACCACCTATA ACTCCAGTCA GTTCTAGGAG ATTCCATGTT TTGTAACATT
  TTAGGGCACC AGACAAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513606	NES12839777	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33668978					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513606	NES12839777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979051 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	950 bp proximal
Rr24983	regulatory region 24983	982 bp proximal
Rr31002	regulatory region 31002	1651 bp distal
Tssr242	transcription start site region 242	495 bp downstream
Tssr9228	transcription start site region 9228	1987 bp downstream
Tssr9229	transcription start site region 9229	1974 bp downstream
Tssr9230	transcription start site region 9230	1187 bp downstream
Tssr9231	transcription start site region 9231	1154 bp downstream
Tssr9232	transcription start site region 9232	1111 bp downstream
Tssr9233	transcription start site region 9233	655 bp downstream
Tssr9234	transcription start site region 9234	626 bp downstream
Tssr9235	transcription start site region 9235	595 bp downstream
Tssr9236	transcription start site region 9236	570 bp downstream
Tssr9237	transcription start site region 9237	538 bp downstream
Tssr9238	transcription start site region 9238	507 bp downstream
Tssr9239	transcription start site region 9239	473 bp downstream
Tssr9240	transcription start site region 9240	459 bp downstream
Tssr9241	transcription start site region 9241	429 bp downstream
Tssr9242	transcription start site region 9242	413 bp downstream
Tssr9243	transcription start site region 9243	286 bp downstream
Tssr9244	transcription start site region 9244	235 bp downstream
Tssr9245	transcription start site region 9245	199 bp downstream
Tssr9246	transcription start site region 9246	180 bp downstream
Tssr9247	transcription start site region 9247	45 bp downstream
Tssr9248	transcription start site region 9248	365 bp upstream
Tssr9249	transcription start site region 9249	392 bp upstream
Tssr9250	transcription start site region 9250	560 bp upstream
Tssr9251	transcription start site region 9251	606 bp upstream
Tssr9252	transcription start site region 9252	661 bp upstream
Tssr9253	transcription start site region 9253	691 bp upstream
Tssr9254	transcription start site region 9254	718 bp upstream
Tssr9255	transcription start site region 9255	737 bp upstream
Tssr9256	transcription start site region 9256	977 bp upstream
Tssr9257	transcription start site region 9257	1001 bp upstream
Tssr9258	transcription start site region 9258	1024 bp upstream
Tssr9259	transcription start site region 9259	1049 bp upstream
Tssr9260	transcription start site region 9260	1104 bp upstream
Tssr9261	transcription start site region 9261	1159 bp upstream
Tssr9262	transcription start site region 9262	1167 bp upstream
Tssr9263	transcription start site region 9263	1189 bp upstream
Tssr9264	transcription start site region 9264	1234 bp upstream
Tssr9265	transcription start site region 9265	1265 bp upstream
Tssr9266	transcription start site region 9266	1354 bp upstream
Tssr9267	transcription start site region 9267	1645 bp upstream
Tssr9268	transcription start site region 9268	1701 bp upstream
Tssr14131	transcription start site region 14131	1982 bp upstream