rs33668979 SNP Detail

Summary

• ID
  rs33668979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTGGTCT CTGCTATTGA GGCAGAAGAG
  GTCCAGCCTT Tacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
  catacaAAAT CCCCTTCTAT GCTTCTTTAA ACAATGTAAA ATTACTATTA TGGTTATAAT
  R
  AAGCAAGTGG CATATTTAAT ATAGGATACT AATACTATTC AACATAAAGA AATATACAGA
  CTTGTAGCTC TGGTAGACAA ATTATTTTAG AATTTTGTGG CTATGAAAAA GTCACTTATT
  gagctagatt ggtgattaag aacagttgtt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513607	NES12839773	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G		A	G	G	G		G
ss320045533	CHEV_1_151950370	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33668979					SNP	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513607	NES12839773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978991 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1010 bp proximal
Rr24983	regulatory region 24983	1042 bp proximal
Rr31002	regulatory region 31002	1591 bp distal
Tssr242	transcription start site region 242	435 bp downstream
Tssr9227	transcription start site region 9227	1967 bp downstream
Tssr9228	transcription start site region 9228	1927 bp downstream
Tssr9229	transcription start site region 9229	1914 bp downstream
Tssr9230	transcription start site region 9230	1127 bp downstream
Tssr9231	transcription start site region 9231	1094 bp downstream
Tssr9232	transcription start site region 9232	1051 bp downstream
Tssr9233	transcription start site region 9233	595 bp downstream
Tssr9234	transcription start site region 9234	566 bp downstream
Tssr9235	transcription start site region 9235	535 bp downstream
Tssr9236	transcription start site region 9236	510 bp downstream
Tssr9237	transcription start site region 9237	478 bp downstream
Tssr9238	transcription start site region 9238	447 bp downstream
Tssr9239	transcription start site region 9239	413 bp downstream
Tssr9240	transcription start site region 9240	399 bp downstream
Tssr9241	transcription start site region 9241	369 bp downstream
Tssr9242	transcription start site region 9242	353 bp downstream
Tssr9243	transcription start site region 9243	226 bp downstream
Tssr9244	transcription start site region 9244	175 bp downstream
Tssr9245	transcription start site region 9245	139 bp downstream
Tssr9246	transcription start site region 9246	120 bp downstream
Tssr9247	transcription start site region 9247	5 bp upstream
Tssr9248	transcription start site region 9248	425 bp upstream
Tssr9249	transcription start site region 9249	452 bp upstream
Tssr9250	transcription start site region 9250	620 bp upstream
Tssr9251	transcription start site region 9251	666 bp upstream
Tssr9252	transcription start site region 9252	721 bp upstream
Tssr9253	transcription start site region 9253	751 bp upstream
Tssr9254	transcription start site region 9254	778 bp upstream
Tssr9255	transcription start site region 9255	797 bp upstream
Tssr9256	transcription start site region 9256	1037 bp upstream
Tssr9257	transcription start site region 9257	1061 bp upstream
Tssr9258	transcription start site region 9258	1084 bp upstream
Tssr9259	transcription start site region 9259	1109 bp upstream
Tssr9260	transcription start site region 9260	1164 bp upstream
Tssr9261	transcription start site region 9261	1219 bp upstream
Tssr9262	transcription start site region 9262	1227 bp upstream
Tssr9263	transcription start site region 9263	1249 bp upstream
Tssr9264	transcription start site region 9264	1294 bp upstream
Tssr9265	transcription start site region 9265	1325 bp upstream
Tssr9266	transcription start site region 9266	1414 bp upstream
Tssr9267	transcription start site region 9267	1705 bp upstream
Tssr9268	transcription start site region 9268	1761 bp upstream
Tssr14130	transcription start site region 14130	1978 bp upstream
Tssr14131	transcription start site region 14131	1922 bp upstream