rs33668980 SNP Detail

Summary

• ID
  rs33668980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGCAAAT CCTTAGGGAA TGCTGACATC
  TTACCATGCC AAACAAATCA CACCCATTTT TTTTTAATCC AAATGTCATG ACTACTAAAA
  CCATAATAGG TGTTCCATTT TCATTTTCTG ATTTAGTAAA AATGAACTGA CACACAGAGA
  M
  ATATTTTAAT GTAATTTTCC TTACATTTTT AGTTTAAAAG TTTGGTCCAT GAAAAGGGTC
  TATCTTCTGt aaataaataa ataaattatt aGTCATCGGT GGCATTGGGA AGTGAACCTT
  AGAAGTTTGT GCTTGCCAGG CACTGGTCTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513609	NES12839769	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C		A	C	C	A		C
ss320045531	CHEV_1_151950080	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33668980					SNP	C	C	C	C	C	A	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513609	NES12839769	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978701 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	145 bp downstream
Tssr9224	transcription start site region 9224	1893 bp downstream
Tssr9225	transcription start site region 9225	1768 bp downstream
Tssr9226	transcription start site region 9226	1755 bp downstream
Tssr9227	transcription start site region 9227	1677 bp downstream
Tssr9228	transcription start site region 9228	1637 bp downstream
Tssr9229	transcription start site region 9229	1624 bp downstream
Tssr9230	transcription start site region 9230	837 bp downstream
Tssr9231	transcription start site region 9231	804 bp downstream
Tssr9232	transcription start site region 9232	761 bp downstream
Tssr9233	transcription start site region 9233	305 bp downstream
Tssr9234	transcription start site region 9234	276 bp downstream
Tssr9235	transcription start site region 9235	245 bp downstream
Tssr9236	transcription start site region 9236	220 bp downstream
Tssr9237	transcription start site region 9237	188 bp downstream
Tssr9238	transcription start site region 9238	157 bp downstream
Tssr9239	transcription start site region 9239	123 bp downstream
Tssr9240	transcription start site region 9240	109 bp downstream
Tssr9241	transcription start site region 9241	79 bp downstream
Tssr9242	transcription start site region 9242	63 bp downstream
Tssr9243	transcription start site region 9243	54 bp upstream
Tssr9244	transcription start site region 9244	99 bp upstream
Tssr9245	transcription start site region 9245	119 bp upstream
Tssr9246	transcription start site region 9246	156 bp upstream
Tssr9247	transcription start site region 9247	295 bp upstream
Tssr9248	transcription start site region 9248	715 bp upstream
Tssr9249	transcription start site region 9249	742 bp upstream
Tssr9250	transcription start site region 9250	910 bp upstream
Tssr9251	transcription start site region 9251	956 bp upstream
Tssr9252	transcription start site region 9252	1011 bp upstream
Tssr9253	transcription start site region 9253	1041 bp upstream
Tssr9254	transcription start site region 9254	1068 bp upstream
Tssr9255	transcription start site region 9255	1087 bp upstream
Tssr9256	transcription start site region 9256	1327 bp upstream
Tssr9257	transcription start site region 9257	1351 bp upstream
Tssr9258	transcription start site region 9258	1374 bp upstream
Tssr9259	transcription start site region 9259	1399 bp upstream
Tssr9260	transcription start site region 9260	1454 bp upstream
Tssr9261	transcription start site region 9261	1509 bp upstream
Tssr9262	transcription start site region 9262	1517 bp upstream
Tssr9263	transcription start site region 9263	1539 bp upstream
Tssr9264	transcription start site region 9264	1584 bp upstream
Tssr9265	transcription start site region 9265	1615 bp upstream
Tssr9266	transcription start site region 9266	1704 bp upstream
Tssr9267	transcription start site region 9267	1995 bp upstream
Tssr14130	transcription start site region 14130	1688 bp upstream
Tssr14131	transcription start site region 14131	1632 bp upstream