rs33669204 SNP Detail

Summary

• ID
  rs33669204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC ACCGACTTCA TTTATGCTTC
  R
  GAATGAAATA AAGGAGGGGC CCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45806375	mCV24884191	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss51195107	NES13813324	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A		G	A	A	A		G	A	G	G		G
ss149192234	ENSMUSSNP1505393	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321670142	CHEV_5_123441111	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33669204					SNP	G	G	G	A	G	A	A	A	G	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195107	NES13813324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129165 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1569 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1832 bp upstream
Rr620032	regulatory region 620032	1954 bp distal
Rr620033	regulatory region 620033	1807 bp distal
Rr620034	regulatory region 620034	1306 bp distal
Rr620035	regulatory region 620035	1161 bp distal
Rr620036	regulatory region 620036	286 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1850 bp downstream
Tssr48731	transcription start site region 48731	1821 bp downstream
Tssr48732	transcription start site region 48732	1787 bp downstream
Tssr48733	transcription start site region 48733	1736 bp downstream
Tssr48734	transcription start site region 48734	1490 bp downstream
Tssr48735	transcription start site region 48735	1363 bp downstream
Tssr48736	transcription start site region 48736	1340 bp downstream
Tssr48737	transcription start site region 48737	1159 bp downstream
Tssr48738	transcription start site region 48738	333 bp downstream
Tssr48739	transcription start site region 48739	322 bp downstream
Tssr48740	transcription start site region 48740	277 bp downstream
Tssr48741	transcription start site region 48741	238 bp downstream
Tssr53172	transcription start site region 53172	1991 bp upstream
Tssr53173	transcription start site region 53173	1822 bp upstream
Tssr53174	transcription start site region 53174	1764 bp upstream
Tssr53175	transcription start site region 53175	812 bp upstream
Tssr53176	transcription start site region 53176	695 bp upstream
Tssr53177	transcription start site region 53177	639 bp upstream
Tssr53178	transcription start site region 53178	607 bp upstream
Tssr53179	transcription start site region 53179	573 bp upstream
Tssr53180	transcription start site region 53180	529 bp upstream