rs33670376 SNP Detail

Summary

• ID
  rs33670376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136486862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA TCGATGCAAA CTGGGTCTTC
  W
  TGCTAAACAG TCACAGCTCA TATGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45807039	mCV23750577	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss144515012	ENSMUSSNP1140435	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321699559	CHEV_5_136933878	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33670376					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136486862 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622611	regulatory region 622611	1284 bp distal
Rr622612	regulatory region 622612	388 bp proximal
Rr622613	regulatory region 622613	1955 bp proximal
Tssr53839	transcription start site region 53839	453 bp downstream
Tssr53840	transcription start site region 53840	499 bp downstream
Tssr53841	transcription start site region 53841	1972 bp downstream