rs33670666 SNP Detail

Summary

• ID
  rs33670666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123367243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCTCGA GGCTGTCCTG
  GGTTATATTA GACCTTGTCT CAAAAAAAAA CCAAAAAAAA AAAAAAAAAA AAAAAACAAA
  AAAGAAAAGT AAAAATGAAA TGCAGACTCT AATTGGGATA GGGAAAAGAC TCTGGATTTT
  AAGAAAACCC TCACCTCTGC TAATTGCTCT TTTAAGTGGA GCCAGATTAA GCACATTGTC
  Y
  TTACTGTAAA AGGGGAAACA GGGCCAGAGT GGAGCCAATG CTTGCCCAGT TAGGAAGGGG
  GAATGGTTGG CTCTGTGATC TGTTTACCTC CTAAGCAGAT ATATTTTTCA TAAAACCCCA
  AGTCAGTGTA TAGAGGAAGG GGAGGCTAAA TCACACTCAT TGCTGGGCAC AATGACATCT
  GGGTGATGGG TGCCAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45806784	mCV25107611	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss60834925	NES16023891	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	T		C	T	T	T		C	T	T	C		T
ss149193639	ENSMUSSNP1240292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321670462	CHEV_5_123679189	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33670666					SNP	C	C	T	C	T	T	T	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834925	NES16023891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123367243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	473 bp distal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	within coordinates
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	809 bp downstream
Tssr48774	transcription start site region 48774	953 bp downstream
Tssr48775	transcription start site region 48775	879 bp downstream