rs33670807 SNP Detail

Summary

• ID
  rs33670807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31897910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG GTAGGCTCCT GGAGCTATGG
  R
  TACACCACAG ACTTTAGTCC CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39564011	mCV24384286	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss60257444	NES15753523	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G	A	A	A	A	A	A	A	A	A
ss145462662	ENSMUSSNP3126214	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33670807					SNP	A	A	G	G	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257444	NES15753523	PERLEGEN	MM_PANEL	f	SNP	A/G
ss159832399	UOL_MMUSEQ_960	UOL_CGR	Mmu17_30637692_36837814	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31897910 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	997 bp downstream
Tssr143681	transcription start site region 143681	2 bp downstream
Tssr143682	transcription start site region 143682	633 bp upstream
Tssr143683	transcription start site region 143683	703 bp upstream
Tssr147305	transcription start site region 147305	812 bp upstream
Tssr147306	transcription start site region 147306	770 bp upstream
Tssr147307	transcription start site region 147307	742 bp upstream
Tssr147308	transcription start site region 147308	396 bp upstream