rs33670817 SNP Detail

Summary

• ID
  rs33670817
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACTACCT TGTGACTCAC
  AACCATCTGT AATGGGACCC AATGTGCTCT TCTGGTGTGT CTGAGTTCAA CTACAGCTAC
  TCATATAAAT AAAAGTAAAT AACTCTTTTA AAAAAATGAA ATCAAAACAA TCGCCTAAAG
  CCATAGAAAT GAAATCTAGT AAAAAAAAAA TCGAAGAATA ATTAGCAAAG AGTCTTGATT
  W
  AAAACAGACA CAGGATTGTG GTCTCCTTTC ATGGCAGCCT GCTTACCCAG CTGTTCTCCT
  TGCCTTTTCA TCATAGCTAC CAAGTCCTGG AGTGCAGGAT CAGTCATGGC TGCTTTCAGG
  GCAAGTGCTT GGTGGCACTA AGCACTCAGC TTGCCCATGG TGCTGACAGT GACATCTTCG
  CAGAGGGCAG CATCCATCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46841915	NES10707177	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T		A	T	A	A		A
ss320863267	CHEV_3_105616639	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33670817					SNP	T	T	T	T	T	T	A	T	T	T	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841915	NES10707177	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721037 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1846 bp upstream
Rr582787	regulatory region 582787	1354 bp proximal
Rr582788	regulatory region 582788	1869 bp proximal
Tssr31084	transcription start site region 31084	1809 bp upstream