rs33670906 SNP Detail

Summary

• ID
  rs33670906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13328361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCAGAGA GGTGGGAAGG
  AATAGGGACT TAAACGTTCA TACTGGGGAC TCGTGGCCAG CTGCCCCTCT ACGACCGACC
  GCCAAGGCAC GCTTTGTGCG CAGGACCCGG AATCCGGTAC GAGCCTGCAT CCCGACTTTG
  TCTGGGCCTG TCCTTGGGGT GACGTCATTC TGAGAGTCAG CAGAATAAGT AGCGTCCCCT
  S
  CTGCAGTCCA GAGCTAAGGC TGTGAATTCA GGTCGATTCC CCCAGCCCTA CAAGGAGCCA
  GGGATTCCAA CAAAAGGATG GTTTCAGCTA AGGCAGTTTA GGGGTGCCTC ATCCTGATCT
  CACATAGGCA GTGAGGGTGA CTCTTTGGCT TCTTACTGGA ATCTCAGGAG AGAAAACAAA
  AAAAAAAAAA AAACAACAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841976	NES10963141	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C		G	G	C	G
ss134090788	ENSMUSSNP2509022	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33670906					SNP	G	G	G	G	G	G	C	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841976	NES10963141	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13328361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22634	CpG island 22634	18 bp distal
Rr394757	regulatory region 394757	within coordinates
Rr690232	regulatory region 690232	within coordinates
Rr690233	regulatory region 690233	389 bp distal
Rr690234	regulatory region 690234	within coordinates
Rr690235	regulatory region 690235	898 bp proximal