rs33670999 SNP Detail

Summary

• ID
  rs33670999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93283956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGC TGTCTCTGCC TCCAAGTGCT
  R
  TGGTTATAGG CAGCTGCCAT ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45306745	mCV23857825	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146943810	ENSMUSSNP1708353	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320395939	CHEV_2_93293768	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33670999					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93283956 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561200	regulatory region 561200	943 bp distal
Rr561201	regulatory region 561201	780 bp distal
Rr561202	regulatory region 561202	467 bp distal
Rr561203	regulatory region 561203	1352 bp proximal
Rr561204	regulatory region 561204	1386 bp proximal
Tssr18992	transcription start site region 18992	778 bp downstream
Tssr18993	transcription start site region 18993	169 bp downstream
Tssr18994	transcription start site region 18994	106 bp downstream
Tssr18995	transcription start site region 18995	1052 bp upstream
Tssr25289	transcription start site region 25289	924 bp upstream
Tssr25290	transcription start site region 25290	444 bp upstream