rs33671637 SNP Detail

Summary

• ID
  rs33671637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13330183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTGTC TCTGTCTCTG
  TCTCTGTCTC TGTCTCTGTC TCTGTCTCTG TCTCTCTCTC TCTCTCTCTC TCTGTGTGGT
  GAGTTAGACA CATTTCCTGA AAGTCAGACA GATAGGGATA ACGGCCATGA CTAGAAAATA
  AGATGACAGA TTTCTAAGAT GACCAGCTTC CTCCTCTCAA GATGGCTGCC TTTTTCCTCA
  Y
  TGCCCTGAAC TGAGACAAAG GCCTAGCCAC CTAAAATAGA GGCCTGGCGG GCTTCTTTCT
  CTTTCATGAG TAGGACCTGA TGAGCTTAAG GCCAGATCAG TCAATGTCTA CAGGCTCTTG
  AGTTCCTGCC CAACAGAAGC TGTTTTTAGG AAGCAAAATG TCTACAACAT GTTGGCACAT
  AGCTCAAGAT GGCTAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841988	NES10963088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33671637					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841988	NES10963088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13330183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22634	CpG island 22634	1840 bp distal
Rr394757	regulatory region 394757	1528 bp downstream
Rr690232	regulatory region 690232	1491 bp distal
Rr690234	regulatory region 690234	1813 bp distal
Rr690235	regulatory region 690235	472 bp distal