rs33671640 SNP Detail

Summary

• ID
  rs33671640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13330222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCTCT GTCTCTCTCT
  CTCTCTCTCT CTCTGTGTGG TGAGTTAGAC ACATTTCCTG AAAGTCAGAC AGATAGGGAT
  AACGGCCATG ACTAGAAAAT AAGATGACAG ATTTCTAAGA TGACCAGCTT CCTCCTCTCA
  AGATGGCTGC CTTTTTCCTC ACTGCCCTGA ACTGAGACAA AGGCCTAGCC ACCTAAAATA
  R
  AGGCCTGGCG GGCTTCTTTC TCTTTCATGA GTAGGACCTG ATGAGCTTAA GGCCAGATCA
  GTCAATGTCT ACAGGCTCTT GAGTTCCTGC CCAACAGAAG CTGTTTTTAG GAAGCAAAAT
  GTCTACAACA TGTTGGCACA TAGCTCAAGA TGGCTAGCAA ATACACAGTC CCTCATCTCC
  CCTGGAAGCA GTCATCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841991	NES10963089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33671640					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841991	NES10963089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13330222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22634	CpG island 22634	1879 bp distal
Rr394757	regulatory region 394757	1567 bp downstream
Rr690232	regulatory region 690232	1530 bp distal
Rr690234	regulatory region 690234	1852 bp distal
Rr690235	regulatory region 690235	511 bp distal