rs33672021 SNP Detail

Summary

• ID
  rs33672021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5937243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTGTGCAA TGCCTCCATT CCTGAGTGGA CCCATTACCA GTGCCTGCAT CTGCTTCTGA
  CCACATGGAA GGGGAGGGCT TTTGCTTTAA TGAAGCAGGT GTGTTTGGAA TTGTATTTTA
  GGACCAACCT CTCTAAATGC AATATGTGCA GGGGCTCTAG TCATTGGGTT CTGAAGGAGC
  TAGGTGTCCT GAACTGTCTC TCCTTTTCTC CTGGTCAGCC ACAGGCACTG TCAGGTTCAC
  ACAGTTGCAC TTACAGGCAA GCTAAGATGT TGAGATCTGT TTTGGACTTA ACATTTGTAA
  Y
  GTCCTCTTTT CCTGCCCACT TCCTGCAGGC TCGGGTCATG TACGACTTTG CTGCTGAGCC
  TGGAAACAAT GAGCTGACCG TTACTGAAGG AGAAATCATC ACAGTTACAA ACCCGGTAAG
  AGCGGGCGAG CGTACAGTGC TGTGGATGTG CGTTCATGTG GTGCCTTTCT TCTACATGCT
  CAGCAGCTCA CATCGGTGTT TCAGCTGGTG CTTATGAAAT GCTGATGCTA CAAGAAGCTG
  TCACATGCAC ACCTAGAGAA GTTCAGCCCC TGCATGTGGC TGAGTGTGTG ACTAAATTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39564627	mCV23634275	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33672021					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5937243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	36 bp proximal
Rr332307	regulatory region 332307	1043 bp distal
Rr332309	regulatory region 332309	558 bp proximal
Rr335511	regulatory region 335511	1158 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	1260 bp downstream
Snx9	sorting nexin 9	within coordinates