rs33672285 SNP Detail

Summary

• ID
  rs33672285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13330615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCGGGTG CTGGCTGGGC
  AGGAGAAGCA GCAGCGGCCC TGGGAGCCCA ATAACAGTGC TTTATCCACC TCACCCCCAC
  CCCATCCCCT GGGGAGCTTC TGTCAATCAC CTCCCAAACA AAATAATTCC ATCTGTGTCC
  TTGTCTCCGG ATCTACTTCT GTGGGAACAA GAGGCAGAGA ACGTCTTATG CTGCAGACCA
  R
  GCATCCAGAA ATAAAGGCAT GAACTGGGGT TGAGACTTCT TGCCCTCCCA GCTCTCTGCC
  TCTCAACAAC AAAACTTTGC TTGGTTTCCT CGGTATCAGG CTAAACGTGC CATGCATTAG
  CCCTCCATAA TGGTCTAGCT TCTATTGGGC ATGTGTATGC CTGTGAAGTA AAAGCAAAAG
  AATGTGGCTT TAGTATCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841997	NES10963076	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33672285					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841997	NES10963076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13330615 () rs orientation: forward

Symbol	Name	Function Class
Nyx	nyctalopin	1734 bp upstream
Rr394757	regulatory region 394757	1960 bp downstream
Rr690232	regulatory region 690232	1923 bp distal
Rr690235	regulatory region 690235	904 bp distal