rs33672925 SNP Detail

Summary

• ID
  rs33672925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CAGAGAATCA TCCTTTATGC
  Y
  ACAAACCCGC TTTTGATGAC TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46304514	mCV22323020	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136941087	ENSMUSSNP1417808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323187626	CHEV_9_106792396	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33672925					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767264 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	1446 bp upstream
Cpgi22278	CpG island 22278	1299 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	1835 bp upstream
Rr686409	regulatory region 686409	1162 bp proximal
Rr686410	regulatory region 686410	1340 bp proximal
Rr686411	regulatory region 686411	1722 bp proximal
Rr686412	regulatory region 686412	1890 bp proximal
Rr686413	regulatory region 686413	1904 bp proximal
Tssr86942	transcription start site region 86942	116 bp upstream
Tssr91353	transcription start site region 91353	1301 bp downstream
Tssr91354	transcription start site region 91354	1315 bp downstream
Tssr91355	transcription start site region 91355	1329 bp downstream
Tssr91356	transcription start site region 91356	1336 bp downstream
Tssr91357	transcription start site region 91357	1843 bp downstream
Tssr91358	transcription start site region 91358	1866 bp downstream
Tssr91359	transcription start site region 91359	1900 bp downstream