rs33673198 SNP Detail

Summary

• ID
  rs33673198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45824787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGGTCC ATCCTTTCGT
  CTCAGCTCCA AACTTTGTCT CTGTAACTCC TTTCATGGGT GTTTTGTTCC CAATTCTAAG
  AATTTGCAAA ACACATGAAA CTCAAGAAGA ACGAAGACCA CAGTGTTAGT CAGGGTTTCT
  ATTCCTGCAC AAACATCATG ACCAAGAAGC AGTTGGGGAG GAAAGGTTTT ATTCAGCTTA
  Y
  ATTTCCACAT TGCTGTTCAT CACTGAAAGA AGTCAGGACT GGAACGCAAA AGCAGGTCAG
  AAAGCAGGAG CTGATGCAGA GGCCATGGAG GGATGTTTTT TACTGGCTTG CTTCCCCTGG
  CTTGCTCAGC CTGCTCTCTT ATAGAACCAA GACTACCAGC CCAGGGATGG TCCCACCCAC
  AAGGGGGCTT TTCCTCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45807501	mCV22817051	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148353159	ENSMUSSNP2384754	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33673198					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45824787 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	1257 bp downstream
Cpgi15841	CpG island 15841	1800 bp proximal
Rr611093	regulatory region 611093	901 bp proximal
Rr611094	regulatory region 611094	1045 bp proximal
Rr611095	regulatory region 611095	1450 bp proximal
Rr611096	regulatory region 611096	1984 bp proximal