rs33673392 SNP Detail

Summary

• ID
  rs33673392
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138114376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAC CAGCTGGAAC ACCTAGCTTC
  S
  TGGGACTGAG CAACTACTAG ATTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45808407	mCV22887536	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss144538080	ENSMUSSNP5759877	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33673392					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138114376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	671 bp proximal
Rr399441	regulatory region 399441	710 bp upstream
Rr623030	regulatory region 623030	299 bp proximal
Rr623031	regulatory region 623031	938 bp proximal
Tssr49413	transcription start site region 49413	797 bp upstream
Tssr54072	transcription start site region 54072	737 bp downstream
Zscan21	zinc finger and SCAN domain containing 21	789 bp upstream