rs33674263 SNP Detail

Summary

• ID
  rs33674263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57882960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TATAGTATTT CATGAATGAA
  R
  TGTAAGGTAA TTTTCATATT TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45808021	mCV24207291	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148495470	ENSMUSSNP4796254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321551270	CHEV_5_58116857	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33674263					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57882960 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125228	regulatory region 125228	959 bp distal
Rr125229	regulatory region 125229	159 bp distal
Rr125230	regulatory region 125230	240 bp proximal
Tssr46296	transcription start site region 46296	1674 bp upstream