rs33676320 SNP Detail

Summary

• ID
  rs33676320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136486874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT GGGTCTTCAT GCTAAACAGT
  Y
  ACAGCTCATA TGCATTGAGC TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45808501	mCV23750576	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss144515018	ENSMUSSNP5319531	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321699560	CHEV_5_136933890	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33676320					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136486874 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622611	regulatory region 622611	1296 bp distal
Rr622612	regulatory region 622612	376 bp proximal
Rr622613	regulatory region 622613	1943 bp proximal
Tssr53839	transcription start site region 53839	441 bp downstream
Tssr53840	transcription start site region 53840	487 bp downstream
Tssr53841	transcription start site region 53841	1960 bp downstream