rs33676399 SNP Detail

Summary

• ID
  rs33676399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57402467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CTTCGATGAC ACAAACACAC
  R
  TTGGTTGCAT TCCACATGAA TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39565337	mCV23460055	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145809995	ENSMUSSNP574513	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss325427539	CHEV_17_57234890	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33676399					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57402467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9395	CpG island 9395	1120 bp proximal
Gm11110	predicted gene 11110	within coordinates
Gm46589	predicted gene, 46589	1261 bp upstream
Gm56907	predicted gene, 56907	within coordinates
Rr529273	regulatory region 529273	933 bp distal
Rr529274	regulatory region 529274	241 bp proximal
Rr529275	regulatory region 529275	1279 bp proximal