rs33676547 SNP Detail

Summary

• ID
  rs33676547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13487887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCATGT ACACTATAAC
  CATCTTTCAC TGAGTAGCCT TGAGGTAGTC TTTTCCTCTG TGGAGGAATA AAAGGCTTCA
  ACTGTGCCGG GAAAGGACTT TGGGACAGGC CACTGCCTAA CCAACTTGGC AGCTCGTCTA
  CATTCTGCAG GCCCAGCCCT GCCCTTCCTT CCTCTGTTTT TTGACCATCT GCATGACTCT
  Y
  ATGCTCAATC CAAGATTATT TTTACTTTGG AGATTGTAAA ATACTTTATC TCACTGTGGT
  CCTGTGTTTA AAAAGAACCT AAGAGACCGT TTAACCCATC TATAGAGAAC ATGCTGCCAA
  GGCCTGTTGA TGGTTATCAA ATTCAGCAGG GGTGGAGAGG CTAGTTAGCT CCTCAATTTG
  GATTACAGGT GCGCCTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843035	NES10976931	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33676547					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843035	NES10976931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13487887 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160600	transcription start site region 160600	1266 bp upstream
Tssr160601	transcription start site region 160601	1737 bp upstream
Tssr160602	transcription start site region 160602	1909 bp upstream
Tssr160603	transcription start site region 160603	1924 bp upstream