rs33676550 SNP Detail

Summary

• ID
  rs33676550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13487990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGCCAC TGCCTAACCA
  ACTTGGCAGC TCGTCTACAT TCTGCAGGCC CAGCCCTGCC CTTCCTTCCT CTGTTTTTTG
  ACCATCTGCA TGACTCTTAT GCTCAATCCA AGATTATTTT TACTTTGGAG ATTGTAAAAT
  ACTTTATCTC ACTGTGGTCC TGTGTTTAAA AAGAACCTAA GAGACCGTTT AACCCATCTA
  Y
  AGAGAACATG CTGCCAAGGC CTGTTGATGG TTATCAAATT CAGCAGGGGT GGAGAGGCTA
  GTTAGCTCCT CAATTTGGAT TACAGGTGCG CCTCTACTGC AGGTCACTCT GTGTTCTCTC
  CCACTTCTTT TTTTTTTTTC TATTTTTTTA TTAGATATTT TCTTCATTTA CTTTCAAATG
  CTATCCCAAA AGTCCCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843038	NES10976932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33676550					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843038	NES10976932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13487990 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160600	transcription start site region 160600	1163 bp upstream
Tssr160601	transcription start site region 160601	1634 bp upstream
Tssr160602	transcription start site region 160602	1806 bp upstream
Tssr160603	transcription start site region 160603	1821 bp upstream