rs33676772 SNP Detail

Summary

• ID
  rs33676772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180122306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTCCCGTG GTAATTACAT TTCTGTTGTG TTTAATTCAT
  AACTCGATCA TTTATTCCAA GTTGTGTTGG CCTTGGACTA CAGGCTCTCG GGAACTTCCC
  Y
  AGAAGGAGCT CAAACTGAGT GCTTCCTCTC TGCCTCTGCT TCATCCCTCC CTCCCTCTTT
  CCTCCCTTGC TTTTCTCTCC CTTTTCCCTC CCTCCCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45308114	mCV25371979	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148392644	ENSMUSSNP3752741	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320632263	CHEV_2_180215218	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33676772					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180122306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12896	CpG island 12896	1956 bp proximal