rs33677071 SNP Detail

Summary

• ID
  rs33677071
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44391450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCATTC GGATCACTAT
  AGAAACAGAA AGATGGCTAA TCTCTGAAAA CAAGCAGTCC CAGTCCTGGG CGCCCGCTCC
  ACACTGTCCA AAAAGTACAA GATGCGGTTG TGAGTACAGC TTCCAGAAAC AGTTTCGAGC
  CGTGCTGGCA CAGCGACATC GTGTCAGAAA CAGGCACCTT CATACACTTA CGCCCATGTC
  W
  CACTTTTACC GGCAAAAGCT GACATGGACA CTCGCTGGCA CACCTGTGAC ATCCCTCCTG
  ATGCAGACAC ACACAGAAGC ACGACGTCTC CCCTAGTTGG CCAGTAGAGG GAGCCGCTCG
  ATTCCAGCTA AGGGCCACCC GCTTTCCTTC CCTGCTCTCT GGCTCCAGGG TTCCTCCCAT
  AACTCGTGGC TGCCCAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46304836	mCV22924100	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss136396207	ENSMUSSNP5216366	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33677071					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44391450 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1419 bp distal
Cpgi21660	CpG island 21660	660 bp distal
Cpgi21661	CpG island 21661	within coordinates
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	356 bp upstream
Gm47205	predicted gene, 47205	1361 bp downstream
Rr368728	regulatory region 368728	within coordinates
Tssr89164	transcription start site region 89164	410 bp upstream
Tssr89165	transcription start site region 89165	373 bp upstream