rs33677362 SNP Detail

Summary

• ID
  rs33677362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13489077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTATTGGG AACTGAACTT
  CCCACTTCAT TGGCAGCTTC TGTAAGGCAG GGTCCCAGGA AAATAAACAT TGTTTTGATG
  GACAGGGCAG GAGCTACGAG GAGTAAAAAA AAGCAGGGCG AATATCTCAG GGTACCATTT
  GAAGTACAGC TACCAGAACC CATTTGGTAC CTGCTGAAAA GTTCAGATGG TACTTTGACA
  Y
  GCACCTCCTA CGACTTCCTA CTCAGGCAGA GTGACTCATT GTGGGGGGCC TCCTTGTGAG
  GAATAATCGA AACCTCCACA GTCAGGCCCA GCCATCCTAA AGAGGCTCTC TCCATCAATG
  TGGTCTCCAT TAATATGAAT TGAAGCATGC CCCCACTATG AAGAAATTTA TGCTTTTTCT
  TCAGGAAGAT GTGTACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843050	NES10976906	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33677362					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843050	NES10976906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13489077 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160600	transcription start site region 160600	76 bp upstream
Tssr160601	transcription start site region 160601	547 bp upstream
Tssr160602	transcription start site region 160602	719 bp upstream
Tssr160603	transcription start site region 160603	734 bp upstream