rs33677380 SNP Detail

Summary

• ID
  rs33677380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTTTCC AATGTTTTTA
  ATAACTAACA GCGAGACAGG CACTTTTACA TGTAAAATGT CAGCTACAAC CCTAGTTACT
  TTTTGGTGGC CACAACTTTA ATTCATATTT AGGCAAACCC ATCATTAAAA AAACACTGGG
  GTTCTACAAA TCCTCTGAGT CCGAAGGCAA TTTACTTAGA AAAATGCCAT AAGTGGCTCA
  Y
  ATGCTTTAAC CAGTCAGTTT CTATAAGTGA ATATGCCTAT CCTTAGATAT GGGGGCAGGG
  GAAGAGAGGT TAAGAAGGAT TCCTGTCCCC AAGTGTCATT AAAGCAATAG CAAGGCAGCA
  TTATACCGTA GCTCACCATT CAGCATTCTT GTATCTGTCG CTGTCAGAGC AAAAGGGAAG
  TGCTGACAAG AAAATTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843448	NES10701543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33677380					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843448	NES10701543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838406 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	923 bp downstream
Tssr34937	transcription start site region 34937	155 bp downstream
Tssr34938	transcription start site region 34938	1500 bp downstream
Tssr34939	transcription start site region 34939	1535 bp downstream
Tssr34940	transcription start site region 34940	1548 bp downstream
Tssr34941	transcription start site region 34941	1575 bp downstream
Tssr34942	transcription start site region 34942	1597 bp downstream