rs33677383 SNP Detail

Summary

• ID
  rs33677383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTAACAG CGAGACAGGC
  ACTTTTACAT GTAAAATGTC AGCTACAACC CTAGTTACTT TTTGGTGGCC ACAACTTTAA
  TTCATATTTA GGCAAACCCA TCATTAAAAA AACACTGGGG TTCTACAAAT CCTCTGAGTC
  CGAAGGCAAT TTACTTAGAA AAATGCCATA AGTGGCTCAT ATGCTTTAAC CAGTCAGTTT
  Y
  TATAAGTGAA TATGCCTATC CTTAGATATG GGGGCAGGGG AAGAGAGGTT AAGAAGGATT
  CCTGTCCCCA AGTGTCATTA AAGCAATAGC AAGGCAGCAT TATACCGTAG CTCACCATTC
  AGCATTCTTG TATCTGTCGC TGTCAGAGCA AAAGGGAAGT GCTGACAAGA AAATTTGGTT
  GGAAGTCTGA ACTGTGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46843451	NES10701545	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33677383					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843451	NES10701545	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838427 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	944 bp downstream
Rr582816	regulatory region 582816	722 bp distal
Rr582817	regulatory region 582817	1279 bp proximal
Rr582818	regulatory region 582818	1543 bp proximal
Tssr34937	transcription start site region 34937	134 bp downstream
Tssr34938	transcription start site region 34938	1479 bp downstream
Tssr34939	transcription start site region 34939	1514 bp downstream
Tssr34940	transcription start site region 34940	1527 bp downstream
Tssr34941	transcription start site region 34941	1554 bp downstream
Tssr34942	transcription start site region 34942	1576 bp downstream