rs33677845 SNP Detail

Summary

• ID
  rs33677845
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40693535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTCTCC TGTTGAGCTG
  TATCCTGGTG CAACTGGCTC AACCTCTCTG GCAGTCACTC AACAAACATT TTCCTAAACT
  GAGCATTAAG TCTTAGGAAA CCAGAAACTG CTCAGTTCCT TAACTGACTG CCTTGGAGGT
  TTATGGCTTG AGGAGTTTAT TGGAAAAAAA AAAAAAAATC TCAGGAGGAA GTAACTTTAA
  S
  GAGCGTCAAC CCAGCCCCGG CAGTACTAAA GTTTATCTTT GCTATCTGTT CACTTTTCCG
  CTTTCAGAGA AGACGCCGAA GCGCCCCGAG CCCGCCTTGT GAAGCCTAGC TCCTCTTCCT
  CAGGCTCCCG GAGCTCACGC TCTGGCTCCT CCTCCACCCG CTCCACCGGG AACAGTGCCT
  CCAGAAGCCA GCGGACGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46304475	mCV23403800	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				C
ss52005355	NES15019193	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	C	G		C	G	C		G
ss136338122	ENSMUSSNP3982106	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss322919582	CHEV_9_40590322	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33677845					SNP	G	G	G	G	G	G	C	G	C	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005355	NES15019193	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40693535 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	12 bp proximal
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1149 bp proximal
Rr676921	regulatory region 676921	1873 bp proximal
Tssr84467	transcription start site region 84467	1874 bp downstream
Tssr84468	transcription start site region 84468	1149 bp downstream
Tssr84469	transcription start site region 84469	1062 bp downstream
Tssr84470	transcription start site region 84470	38 bp upstream
Tssr84471	transcription start site region 84471	165 bp upstream
Tssr88968	transcription start site region 88968	816 bp downstream
Tssr88969	transcription start site region 88969	1411 bp downstream
Tssr88970	transcription start site region 88970	1802 bp downstream
Tssr88971	transcription start site region 88971	1901 bp downstream