rs33678111 SNP Detail

Summary

• ID
  rs33678111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13490540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATTATG AGGGGACACA
  AATCTATACA ATTTAATGAA AAGCAGAGGA AGGCAGTCTC CTATGTATGT AGTTAGTTTT
  CAATGGAGAG GACTTTTTAA GGGTAACCAG TTTTACTACA CTGTAATTGT TTTCTACATT
  GTATTCAGAG TAAGTGGATT CTCTAAACAG TTGAATGTTA GATAGGGGAA ATGCAATGGA
  R
  TTACATGGTT TTGGTATGTA GAACATGTAA AGGAAGATAA TCTTTTTCTC TTTGGAAGCC
  CAGGTAGTCA AAGATTCCAA TCTACAGGAA AAGAGCTTTC TGTTCCAAAA TTGATAAATA
  TTAGTAAAAT TTCAAAAGTA CTTTAAACAG AAGAAAAGCT TTTTTTCCTA TGGAAAATCA
  TGTATCTCTT ACCTATTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843059	NES10976875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678111					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843059	NES10976875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13490540 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160600	transcription start site region 160600	1369 bp downstream
Tssr160601	transcription start site region 160601	906 bp downstream
Tssr160602	transcription start site region 160602	735 bp downstream
Tssr160603	transcription start site region 160603	726 bp downstream