rs33678202 SNP Detail

Summary

• ID
  rs33678202
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCAGTT TCTATAAGTG
  AATATGCCTA TCCTTAGATA TGGGGGCAGG GGAAGAGAGG TTAAGAAGGA TTCCTGTCCC
  CAAGTGTCAT TAAAGCAATA GCAAGGCAGC ATTATACCGT AGCTCACCAT TCAGCATTCT
  TGTATCTGTC GCTGTCAGAG CAAAAGGGAA GTGCTGACAA GAAAATTTGG TTGGAAGTCT
  S
  AACTGTGAGA ACAGGAAGAC CATGGTCCAC CCAGAATGAG CAGGGGTAAC ACTTTTTCTA
  TCACCTTTTG GTTCCTTTTG AAATTCATGT TGGCCATGTG AGGTGGTACA TGCTTTTAAT
  CCCAGCACTT GGGAGGCATA GGAAGTGATG CCTGTGGATT TGAGATCAGC TTGGTCTACA
  TAGTGAATTC TAGGACAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843460	NES10701550	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678202					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843460	NES10701550	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838616 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	1133 bp downstream
Rr582816	regulatory region 582816	911 bp distal
Rr582817	regulatory region 582817	1090 bp proximal
Rr582818	regulatory region 582818	1354 bp proximal
Tssr34937	transcription start site region 34937	23 bp upstream
Tssr34938	transcription start site region 34938	1290 bp downstream
Tssr34939	transcription start site region 34939	1325 bp downstream
Tssr34940	transcription start site region 34940	1338 bp downstream
Tssr34941	transcription start site region 34941	1365 bp downstream
Tssr34942	transcription start site region 34942	1387 bp downstream