rs33678834 SNP Detail

Summary

• ID
  rs33678834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13491141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTACTGT TCAGGCATGG
  AGTCAGGAGG ACCACAAGTT CAGATCTTCA ACTCTTTAAC AACTTGGAGG CCACTCTGGA
  CCATATAAAA TTCTTTCTCA ATGTAAAATA AAACCTTTTT AGAGTATAAA AATAGTAATT
  TTTGAATAAT GAACATGTGA GTTCAATATT GTTGAAAAAA TAAAAATTAG AGGATGAGTT
  Y
  ATAGTCTTTA GGAAAAGAGG TGAACATGGA GGCAAACTTA GTGAATCTAC CCCCATCAAG
  ATTTGTGAAA TAGTCTATGC TACAATGAAT ATGAACAGAA TGGAGATCCA GAGTAACAGA
  CACAAAATCA TCTTAGCATA TAACATAAAA GGACTGTGGC TCATTTTCTC TTATTCCCAT
  GTTTACAGGA AATACTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843062	NES10976845	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678834					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843062	NES10976845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13491141 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160600	transcription start site region 160600	1970 bp downstream
Tssr160601	transcription start site region 160601	1507 bp downstream
Tssr160602	transcription start site region 160602	1336 bp downstream
Tssr160603	transcription start site region 160603	1327 bp downstream