rs33678840 SNP Detail

Summary

• ID
  rs33678840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13491401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGTGAA ATAGTCTATG
  CTACAATGAA TATGAACAGA ATGGAGATCC AGAGTAACAG ACACAAAATC ATCTTAGCAT
  ATAACATAAA AGGACTGTGG CTCATTTTCT CTTATTCCCA TGTTTACAGG AAATACTTAG
  CTAGAAAAGT ATGTAAGATT AGATCTTAAC ACAATTTAAT CTCAGAGAGC AGTGTGGCAG
  R
  GAGTGATTTT TAAAATACAA GTATAATTCA GGCTCATTTT TCAGAAGATG GCCATTGTTA
  TTACTGCTTG ATGCTCTAGC CACAATCAAA TTGAACGAAC TATCTTGTGA AACAGACAGC
  TATTTTAAAA GTTAGGGTTT GGAAAGCATT TGAATTTAAC ATGAGCATTT GTTTCATTTT
  CTTTTATGGG ATAGTATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843068	NES10976851	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678840					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843068	NES10976851	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13491401 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Tssr160601	transcription start site region 160601	1767 bp downstream
Tssr160602	transcription start site region 160602	1596 bp downstream
Tssr160603	transcription start site region 160603	1587 bp downstream