rs33678895 SNP Detail

Summary

• ID
  rs33678895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATGCCT ATCCTTAGAT
  ATGGGGGCAG GGGAAGAGAG GTTAAGAAGG ATTCCTGTCC CCAAGTGTCA TTAAAGCAAT
  AGCAAGGCAG CATTATACCG TAGCTCACCA TTCAGCATTC TTGTATCTGT CGCTGTCAGA
  GCAAAAGGGA AGTGCTGACA AGAAAATTTG GTTGGAAGTC TGAACTGTGA GAACAGGAAG
  R
  CCATGGTCCA CCCAGAATGA GCAGGGGTAA CACTTTTTCT ATCACCTTTT GGTTCCTTTT
  GAAATTCATG TTGGCCATGT GAGGTGGTAC ATGCTTTTAA TCCCAGCACT TGGGAGGCAT
  AGGAAGTGAT GCCTGTGGAT TTGAGATCAG CTTGGTCTAC ATAGTGAATT CTAGGACAGG
  CCAGTCACTA TGAATAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46843463	NES10701552	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33678895					SNP	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843463	NES10701552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838635 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	1152 bp downstream
Rr582816	regulatory region 582816	930 bp distal
Rr582817	regulatory region 582817	1071 bp proximal
Rr582818	regulatory region 582818	1335 bp proximal
Tssr34937	transcription start site region 34937	42 bp upstream
Tssr34938	transcription start site region 34938	1271 bp downstream
Tssr34939	transcription start site region 34939	1306 bp downstream
Tssr34940	transcription start site region 34940	1319 bp downstream
Tssr34941	transcription start site region 34941	1346 bp downstream
Tssr34942	transcription start site region 34942	1368 bp downstream