rs33678898 SNP Detail

Summary

• ID
  rs33678898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGATCA GCTTGGTCTA
  CATAGTGAAT TCTAGGACAG GCCAGTCACT ATGAATAGGG AGAACCGGTC TCAAAATAAA
  ATAAAATAAG TCAATGGTAT TCATTGGAGA ACACCATAAA ATATTAGCAT ATTTTGTATT
  TTATTATAGT ATACATTTAT ATGTTCTATA AAATAGAAAG TATTGAAATG TATTCTTCCT
  R
  AGGAGTATGA CTTTCCACTA GACCTTACAT TTAGAGCTAC TGATACCTCT GCTTTTGCAG
  GAGTGGTTCT ATATAAAGAA GCAACTCAAA GAAATATTAG CACATAAAAA AATCCTAGGC
  CACCCTACTG TAACAGACTA GGTCATATGA CAACACCACA GAGAAACAGC TACTTACAAA
  TCTAGGTGAC AAAACCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843466	NES10701490	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678898					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843466	NES10701490	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838975 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	1492 bp downstream
Rr582816	regulatory region 582816	1270 bp distal
Rr582817	regulatory region 582817	731 bp proximal
Rr582818	regulatory region 582818	995 bp proximal
Tssr34937	transcription start site region 34937	382 bp upstream
Tssr34938	transcription start site region 34938	931 bp downstream
Tssr34939	transcription start site region 34939	966 bp downstream
Tssr34940	transcription start site region 34940	979 bp downstream
Tssr34941	transcription start site region 34941	1006 bp downstream
Tssr34942	transcription start site region 34942	1028 bp downstream