rs33678901 SNP Detail

Summary

• ID
  rs33678901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATGTAT TCTTCCTGAG
  GAGTATGACT TTCCACTAGA CCTTACATTT AGAGCTACTG ATACCTCTGC TTTTGCAGGA
  GTGGTTCTAT ATAAAGAAGC AACTCAAAGA AATATTAGCA CATAAAAAAA TCCTAGGCCA
  CCCTACTGTA ACAGACTAGG TCATATGACA ACACCACAGA GAAACAGCTA CTTACAAATC
  Y
  AGGTGACAAA ACCCAACAAA CATATTTACC TTTAAAAACA ACAATCTAGT CAGGTGTGTT
  GGCACTCACT GGAGAGGCTG AGGCAGGAGA ATTGCCATGA GGTCAAATCT AGCCTGGATT
  ACACAGAATC TGTCCAAAAA ATTCAAAGGG AGCCTGGCAT GGTGTGTTTA CATCTCTAAT
  CCCACAAGTT GGCAGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843469	NES10701491	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33678901					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843469	NES10701491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839158 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	1675 bp downstream
Rr582816	regulatory region 582816	1453 bp distal
Rr582817	regulatory region 582817	548 bp proximal
Rr582818	regulatory region 582818	812 bp proximal
Tssr34937	transcription start site region 34937	565 bp upstream
Tssr34938	transcription start site region 34938	748 bp downstream
Tssr34939	transcription start site region 34939	783 bp downstream
Tssr34940	transcription start site region 34940	796 bp downstream
Tssr34941	transcription start site region 34941	823 bp downstream
Tssr34942	transcription start site region 34942	845 bp downstream