rs33679420 SNP Detail

Summary

• ID
  rs33679420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32607788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCGTCGAT CTCAAGCCGA CTCTCACCAT CATCAAGACA
  GAAAAAGTGG ATCTCGAGCT TTTCCCTTCC CCGGGTGAGT GGCAACAGTG AGGCCCCCAC
  Y
  CCAGCTCCGG GTCCCCTTCT GGGCTGCGCT GCTCCCTCAG GAGCACTGGA TGCAGAAGCC
  AGGAGGACTG TTGGTGGCCC AAGACCCTTG GCTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46305167	mCV22734435	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33679420					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32607788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	within coordinates
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	within coordinates
Rr401307	regulatory region 401307	416 bp downstream
Tssr84270	transcription start site region 84270	806 bp downstream
Tssr84271	transcription start site region 84271	787 bp downstream
Tssr84272	transcription start site region 84272	773 bp downstream
Tssr84273	transcription start site region 84273	717 bp downstream
Tssr84274	transcription start site region 84274	676 bp downstream
Tssr84275	transcription start site region 84275	397 bp downstream
Tssr84276	transcription start site region 84276	373 bp upstream
Tssr84277	transcription start site region 84277	494 bp upstream
Tssr84278	transcription start site region 84278	1435 bp upstream
Tssr84279	transcription start site region 84279	1755 bp upstream