rs33679657 SNP Detail

Summary

• ID
  rs33679657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTTTG CAGGAGTGGT
  TCTATATAAA GAAGCAACTC AAAGAAATAT TAGCACATAA AAAAATCCTA GGCCACCCTA
  CTGTAACAGA CTAGGTCATA TGACAACACC ACAGAGAAAC AGCTACTTAC AAATCTAGGT
  GACAAAACCC AACAAACATA TTTACCTTTA AAAACAACAA TCTAGTCAGG TGTGTTGGCA
  Y
  TCACTGGAGA GGCTGAGGCA GGAGAATTGC CATGAGGTCA AATCTAGCCT GGATTACACA
  GAATCTGTCC AAAAAATTCA AAGGGAGCCT GGCATGGTGT GTTTACATCT CTAATCCCAC
  AAGTTGGCAG AGGCAGGCCG ATCTCTTTAA ATTTCAGGAG CGCCTGAGTT CCAGGCCAGT
  CAGGGGTACA TAGTGAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46843475	NES10701493	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33679657					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843475	NES10701493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839223 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	1740 bp downstream
Rr582816	regulatory region 582816	1518 bp distal
Rr582817	regulatory region 582817	483 bp proximal
Rr582818	regulatory region 582818	747 bp proximal
Tssr34937	transcription start site region 34937	630 bp upstream
Tssr34938	transcription start site region 34938	683 bp downstream
Tssr34939	transcription start site region 34939	718 bp downstream
Tssr34940	transcription start site region 34940	731 bp downstream
Tssr34941	transcription start site region 34941	758 bp downstream
Tssr34942	transcription start site region 34942	780 bp downstream