rs33679951 SNP Detail

Summary

• ID
  rs33679951
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCCAGT TACAGTGTCA
  CATGCCTGTC TCCCAAGAAC AGAGACACGA GAGGCAGAGA CAGTCAGATC CCTAGGAGCA
  CACAGGCCGG CTTGGTCCAC GGTGTGAATT TCTGCACTGT GTTAGTTATT GTTTGGTTGC
  TGTGAGAAAA CATCTTAACA AAAGCAACTC AGCAAAGGAA GGGTCCATTT TGGCTTGTAG
  M
  GTCGGGGATA CACTCCATCC TGGAGGGGAC ACATGGTGGC CAGAGGCAGC TGTACATTGC
  ATGCTCAGTC AGGAAGCTAA GAGATACACG CAGCCTCTGG GTTCTCTTTG TCCTTTTGAT
  ATAGCTAGGG ATTTTGGCCC ACGGAATGTT ACTGCCCATA GGTCAGGGTG GATCTTCTTA
  CACCAAAGAA CTGAGTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39565637	mCV24482056	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss145714975	ENSMUSSNP4663266	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
ss325408112	CHEV_17_48487322	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33679951					SNP	A	A	C	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655025 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1825 bp distal
Rr335234	regulatory region 335234	1024 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1580 bp downstream
Tssr145094	transcription start site region 145094	1552 bp downstream
Tssr145095	transcription start site region 145095	1504 bp downstream
Tssr145096	transcription start site region 145096	1471 bp downstream
Tssr145097	transcription start site region 145097	466 bp downstream
Tssr145098	transcription start site region 145098	124 bp downstream
Tssr145099	transcription start site region 145099	483 bp upstream
Tssr145100	transcription start site region 145100	512 bp upstream
Tssr145101	transcription start site region 145101	549 bp upstream
Tssr145102	transcription start site region 145102	648 bp upstream
Tssr148525	transcription start site region 148525	693 bp downstream