rs33680466 SNP Detail

Summary

• ID
  rs33680466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAATA ACAATAATCC
  AAGCATTTGT CAGAAGCAGA AAGTTGAGCC AAGAACAATG CTCTTTGCAG TTTGATCTGG
  CATGAGAGAC TCACACTCCA TACGGTGAGG CCTGTGCAAC ACAGCCGTTC CAATGTAACC
  CTTCCCCCAC CCAAAGAACA ACATCAGAAG CCAGCACTAA ACAGATAATT AAAATGTCCT
  Y
  TGATGGGCAA TTATTTAGTC TGGATTAGAA GGGTCTTTAC CTTTCCAGAA AGACTCCAGT
  CATACGATGC AGCTGTGAGA CTGAGCGTTT GACTTTTCTG TTCCTAGTCT TGGTTTTCAG
  AAATGATGAA ACAAAGTTTA CTCCCACTGT CACTGTCACC CTCAGGCTGT GTCGCAAAGA
  TATGTTTAAG CTCCAAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843484	NES10701459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33680466					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843484	NES10701459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839833 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr582817	regulatory region 582817	within coordinates
Rr582818	regulatory region 582818	137 bp proximal
Tssr34937	transcription start site region 34937	1240 bp upstream
Tssr34938	transcription start site region 34938	73 bp downstream
Tssr34939	transcription start site region 34939	108 bp downstream
Tssr34940	transcription start site region 34940	121 bp downstream
Tssr34941	transcription start site region 34941	148 bp downstream
Tssr34942	transcription start site region 34942	170 bp downstream