rs33680469 SNP Detail

Summary

• ID
  rs33680469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTTTGA TCTGGCATGA
  GAGACTCACA CTCCATACGG TGAGGCCTGT GCAACACAGC CGTTCCAATG TAACCCTTCC
  CCCACCCAAA GAACAACATC AGAAGCCAGC ACTAAACAGA TAATTAAAAT GTCCTCTGAT
  GGGCAATTAT TTAGTCTGGA TTAGAAGGGT CTTTACCTTT CCAGAAAGAC TCCAGTCATA
  M
  GATGCAGCTG TGAGACTGAG CGTTTGACTT TTCTGTTCCT AGTCTTGGTT TTCAGAAATG
  ATGAAACAAA GTTTACTCCC ACTGTCACTG TCACCCTCAG GCTGTGTCGC AAAGATATGT
  TTAAGCTCCA AGGCACAGAC TTCCTCTTTG AGGCCAATGG TATTTTTTTT TCCCCTTTCC
  CTCATTTCCT TTTCTTTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843487	NES10701460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33680469					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843487	NES10701460	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839898 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr582817	regulatory region 582817	within coordinates
Rr582818	regulatory region 582818	72 bp proximal
Tssr34937	transcription start site region 34937	1305 bp upstream
Tssr34938	transcription start site region 34938	8 bp downstream
Tssr34939	transcription start site region 34939	43 bp downstream
Tssr34940	transcription start site region 34940	56 bp downstream
Tssr34941	transcription start site region 34941	83 bp downstream
Tssr34942	transcription start site region 34942	105 bp downstream