rs33681168 SNP Detail

Summary

• ID
  rs33681168
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105840334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGTGA ATGATACTGC
  CTTTCTGATC CTCCTGAATA CTAGGACCAC AGCCTGAACC ACCATGCCTG GTTTGTGTGG
  TGCTGGGATT AAACCCAGAT CTCCATGAAA GGGAGGCAAG CACTCTACCA AGCGAGCCGT
  AGCCCCACCC CACCCTGTGG CACAGTTCTA AAGATCCTGT AAGCCATAAG AGTTGCTTGT
  W
  TACATTTTCA CACATGAATG CCAGAAGATC GAGGAAAGTT CATTTCTAGG GAAGAGTTTA
  TTATTTAACG CCCTCCCCCC ACCCCCGAAG TTTACTGACA CCAGTATGAC CTCATCACCA
  ACAGCAAGGC CTTTATAAAT TCCATCTGGC CTGATGAAGG AGATGAAGCT GAGATAGAAA
  AATGAAGAGT TACCTGTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843496	NES10701425	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33681168					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843496	NES10701425	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105840334 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	354 bp upstream
Rr582817	regulatory region 582817	365 bp distal
Rr582818	regulatory region 582818	1 bp distal
Tssr34937	transcription start site region 34937	1741 bp upstream
Tssr34938	transcription start site region 34938	396 bp upstream
Tssr34939	transcription start site region 34939	388 bp upstream
Tssr34940	transcription start site region 34940	371 bp upstream
Tssr34941	transcription start site region 34941	339 bp upstream
Tssr34942	transcription start site region 34942	307 bp upstream