rs33681258 SNP Detail

Summary

• ID
  rs33681258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118530942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA GCTCTTGTGT CTGCTTCCAG
  Y
  CCTGCACCTC CTGCTTTCTC TTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46305353	mCV23815870	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss137041924	ENSMUSSNP5943762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33681258					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118530942 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688308	regulatory region 688308	1514 bp distal
Rr688309	regulatory region 688309	397 bp distal
Tssr87646	transcription start site region 87646	1474 bp upstream
Tssr87647	transcription start site region 87647	1501 bp upstream
Tssr87648	transcription start site region 87648	1517 bp upstream
Tssr87649	transcription start site region 87649	1561 bp upstream
Tssr87650	transcription start site region 87650	1603 bp upstream
Tssr87651	transcription start site region 87651	1621 bp upstream
Tssr87652	transcription start site region 87652	1898 bp upstream
Tssr91958	transcription start site region 91958	5 bp upstream